R/model_newinterface.R
Annotation_SpatialAnno.RdMake annotations for SRT data by fitting a SpatialAnno model
Annotation_SpatialAnno(SRTProj, markers, q = 15, ...)an object named "SRTProject". The object SRTProject is created by CreateSRTProject.
a named string vector, the marker genes used for annotation.
An optional integer, specify the number of low-dimensional embeddings to extract in DR-SC model.
other parameters pass to model_set_SpatialAnno. Shi, X., Yang, Y., Ma, X., Zhou, Y., Guo, Z., Wang, C., & Liu, J. (2023). Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno. bioRxiv, 2023-02.