Joint embedding and clustering for SRT data by fitting an iSC.MEB model a DR-SC model

Joint embedding and clustering for SRT data by fitting an iSC.MEB model a DR-SC model

Cluster_DRSC(SRTProj, K = NULL, q = 15, ...)

Arguments

SRTProj

an object named "SRTProject". The object SRTProject is created by CreateSRTProject.

K

An optional integer or integer vector, specify the candidates of number of clusters. if K=NULL, it will be set to 4~12.

q

An optional integer, specify the number of low-dimensional embeddings to extract in DR-SC model.

...

other parameters pass to model_set_DRSC.

References

Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu* (2022). Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data, Nucleic Acids Research, gkac219