Visualize the inferred pseudotime on embeddings.

Visualize the inferred pseudotime on embeddings.

TrajectEmbedPlot(
  SRTProj,
  plotEmbeddings = "tSNE",
  no_axis = FALSE,
  base_size = 12,
  border_col = "gray",
  legend.position = "right"
)

Arguments

SRTProj

a SRTProject object with cellMetaData Traject.commonPseudotime.

plotEmbeddings

a string, specify the embeddings.

no_axis

a logical value, whether display the axis in plot.

base_size

a positive real, the baseline text size in plot.

border_col

a string, the color of border in plot.

legend.position

a string, the position of legend.