Spatial clustering for SRT data by fitting a SC-MEB model — Cluster_SCMEB • SRTpipeline

Spatial clustering for SRT data by fitting a SC-MEB model

Cluster_SCMEB(SRTProj, K = NULL, reduction = "PCA", ...)

Arguments

SRTProj: an object named "SRTProject". The object SRTProject is created by CreateSRTProject.
K: an optional integer or integer vector, specify the candidates of number of clusters. if K=NULL, it will be set to 4~12.
reduction: a string, specify the reduction slot name in SRTProj for fitting SC-MEB model.
...: other parameters pass to model_set_iSCMEB.

References

Yi Yang, Xingjie Shi, Wei Liu, et.al and Jin Liu* (2021). SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes. Briefings in Bioinformatics